Dca5619.1
Annotation
- 3-exons
- f-1
- sp|Q9LHM4_ARATH#Gypsy/Ty-3 retroelement polyprotein#Arabidopsis thaliana (Mouse-ear cress)#Name=T21B14.24#GO:0005634;GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P1C
- Repeat List (scaffold1217)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5619.1 |
94 |
308 |
331 |
40.48 |
215 |
46 |
1e-62
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9LHM4_ARATH |
1131 |
1427 |
1499 |
19.81 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5619.1 |
106 |
309 |
331 |
25.98 |
204 |
31 |
4e-32
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
1124 |
1409 |
1539 |
18.58 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1217 |
Augustus |
mRNA |
24143 |
26749 |
. |
- |
. |
ID=Dca5619.1;Parent=Dca5619 |
| scaffold1217 |
Augustus |
exon |
24143 |
24529 |
. |
- |
. |
ID=Dca5619.1.exon1;Parent=Dca5619.1 |
| scaffold1217 |
Augustus |
exon |
24668 |
24997 |
. |
- |
. |
ID=Dca5619.1.exon2;Parent=Dca5619.1 |
| scaffold1217 |
Augustus |
exon |
26471 |
26749 |
. |
- |
. |
ID=Dca5619.1.exon3;Parent=Dca5619.1 |
