Carnation DB

Dca56253.1

Annotation

5-exons
f-1
sp|D7SRA6_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0072g00860#GO:0005488#1F0P0C
sp|B9SLH4_RICCO#Tetratricopeptide repeat protein, tpr, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0686810#GO:0005488#1F0P0C
Repeat List (scaffold7944)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56253.1	105	330	331	56.19	226	83	4e-100
Target_name	Start	End	Length	Cov(%)
sp\|D7SRA6_VITVI	101	325	325	69.23

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56253.1	87	328	331	52.87	242	73	1e-88
Target_name	Start	End	Length	Cov(%)
Os10t0460900-00	140	381	382	63.35

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold7944	Augus-PASA	mRNA	11249	13195	.	+	.	ID=Dca56253.1;Parent=Dca56253
scaffold7944	Augus-PASA	exon	11249	11464	.	+	.	ID=Dca56253.1.exon1;Parent=Dca56253.1
scaffold7944	Augus-PASA	exon	11697	11748	.	+	.	ID=Dca56253.1.exon2;Parent=Dca56253.1
scaffold7944	Augus-PASA	exon	11823	12112	.	+	.	ID=Dca56253.1.exon3;Parent=Dca56253.1
scaffold7944	Augus-PASA	exon	12194	12340	.	+	.	ID=Dca56253.1.exon4;Parent=Dca56253.1
scaffold7944	Augus-PASA	exon	12905	13195	.	+	.	ID=Dca56253.1.exon5;Parent=Dca56253.1
scaffold7944	Augus-PASA	mRNA	11439	13195	.	+	.	ID=Dca56253.2;Parent=Dca56253
scaffold7944	Augus-PASA	exon	11439	11464	.	+	.	ID=Dca56253.2.exon1;Parent=Dca56253.2
scaffold7944	Augustus	exon	11693	11748	.	+	.	ID=Dca56253.2.exon2;Parent=Dca56253.2
scaffold7944	Augus-PASA	exon	11823	12112	.	+	.	ID=Dca56253.2.exon3;Parent=Dca56253.2
scaffold7944	Augus-PASA	exon	12194	12340	.	+	.	ID=Dca56253.2.exon4;Parent=Dca56253.2
scaffold7944	Augus-PASA	exon	12905	13195	.	+	.	ID=Dca56253.2.exon5;Parent=Dca56253.2