Dca56289.1
Annotation
- 3-exons
- f-1
- sp|C5YFZ2_SORBI#Putative uncharacterized protein Sb06g016046#Sorghum bicolor (Sorghum) (Sorghum vulgare)#Name=Sb06g016046#GO:0003676#1F0P0C
- sp|Q10M70_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass, expressed#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g20490#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold7955)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56289.1 |
117 |
243 |
373 |
14.2 |
127 |
36 |
2e-13
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|C5YFZ2_SORBI |
279 |
428 |
856 |
17.52 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56289.1 |
224 |
328 |
373 |
12.06 |
105 |
40 |
9e-14
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
446 |
559 |
1262 |
9.03 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7955 |
Augustus |
mRNA |
6578 |
9634 |
. |
- |
. |
ID=Dca56289.1;Parent=Dca56289 |
| scaffold7955 |
Augustus |
exon |
6578 |
6970 |
. |
- |
. |
ID=Dca56289.1.exon1;Parent=Dca56289.1 |
| scaffold7955 |
Augustus |
exon |
8679 |
9315 |
. |
- |
. |
ID=Dca56289.1.exon2;Parent=Dca56289.1 |
| scaffold7955 |
Augustus |
exon |
9543 |
9634 |
. |
- |
. |
ID=Dca56289.1.exon3;Parent=Dca56289.1 |
