Carnation DB

Dca56556.1

Annotation

11-exons
f-1
sp|B9H3A4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1075741#GO:0005634;GO:0003684;GO:0006289#1F1P1C
AT5G16630.1 | Symbols: ATRAD4, RAD4 | DNA repair protein Rad4 family | chr5:5455325-5459461 FORWARD LENGTH=865
Repeat List (scaffold80)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56556.1	6	869	869	55.69	864	55	0
Target_name	Start	End	Length	Cov(%)
sp\|B9H3A4_POPTR	23	868	868	97.46

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56556.1	65	869	869	47.75	805	50	0
Target_name	Start	End	Length	Cov(%)
AT5G16630.1	83	865	865	90.52

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold80	Augustus	mRNA	223770	228196	.	-	.	ID=Dca56556.1;Parent=Dca56556
scaffold80	Augustus	exon	223770	224168	.	-	.	ID=Dca56556.1.exon1;Parent=Dca56556.1
scaffold80	Augustus	exon	224282	224491	.	-	.	ID=Dca56556.1.exon2;Parent=Dca56556.1
scaffold80	Augustus	exon	224623	224775	.	-	.	ID=Dca56556.1.exon3;Parent=Dca56556.1
scaffold80	Augustus	exon	224857	225051	.	-	.	ID=Dca56556.1.exon4;Parent=Dca56556.1
scaffold80	Augustus	exon	225155	225900	.	-	.	ID=Dca56556.1.exon5;Parent=Dca56556.1
scaffold80	Augustus	exon	225987	226183	.	-	.	ID=Dca56556.1.exon6;Parent=Dca56556.1
scaffold80	Augustus	exon	226423	226472	.	-	.	ID=Dca56556.1.exon7;Parent=Dca56556.1
scaffold80	Augustus	exon	226645	226746	.	-	.	ID=Dca56556.1.exon8;Parent=Dca56556.1
scaffold80	Augustus	exon	226824	226916	.	-	.	ID=Dca56556.1.exon9;Parent=Dca56556.1
scaffold80	Augustus	exon	227398	227490	.	-	.	ID=Dca56556.1.exon10;Parent=Dca56556.1
scaffold80	Augustus	exon	227825	228196	.	-	.	ID=Dca56556.1.exon11;Parent=Dca56556.1