Carnation DB

Dca5672.1

Annotation

5-exons
f-1
sp|D7MSE6_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_919171#unknown#0F0P0C
AT5G59410.1 | Symbols: | Rab5-interacting family protein | chr5:23959761-23960730 REVERSE LENGTH=130
Repeat List (scaffold122)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5672.1	1	123	230	39.13	123	71	2e-47
Target_name	Start	End	Length	Cov(%)
sp\|D7MSE6_ARALL	1	127	129	98.44

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5672.1	2	123	230	38.69	122	72	3e-47
Target_name	Start	End	Length	Cov(%)
AT5G59410.1	5	128	130	95.38

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold122	Augus-PASA	mRNA	47416	50865	.	+	.	ID=Dca5672.1;Parent=Dca5672
scaffold122	Augus-PASA	exon	47416	47520	.	+	.	ID=Dca5672.1.exon1;Parent=Dca5672.1
scaffold122	Augus-PASA	exon	48425	48528	.	+	.	ID=Dca5672.1.exon2;Parent=Dca5672.1
scaffold122	Augus-PASA	exon	49401	49530	.	+	.	ID=Dca5672.1.exon3;Parent=Dca5672.1
scaffold122	Augustus	exon	49631	49657	.	+	.	ID=Dca5672.1.exon4;Parent=Dca5672.1
scaffold122	Augustus	exon	50539	50865	.	+	.	ID=Dca5672.1.exon5;Parent=Dca5672.1