Dca56783.1
Annotation
- 2-exons
- f-1
- sp|Q2QSZ7_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g22380#GO:0003723;GO:0003964;GO:0008270;GO:0006278#3F1P0C
- Repeat List (scaffold8067)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56783.1 |
3 |
241 |
284 |
39.43 |
239 |
44 |
3e-57
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSZ7_ORYSJ |
630 |
886 |
923 |
27.84 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56783.1 |
15 |
199 |
284 |
21.83 |
185 |
34 |
9e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
1021 |
1203 |
1539 |
11.89 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8067 |
Augustus |
mRNA |
12 |
2005 |
. |
+ |
. |
ID=Dca56783.1;Parent=Dca56783 |
| scaffold8067 |
Augustus |
exon |
12 |
557 |
. |
+ |
. |
ID=Dca56783.1.exon1;Parent=Dca56783.1 |
| scaffold8067 |
Augustus |
exon |
1697 |
2005 |
. |
+ |
. |
ID=Dca56783.1.exon2;Parent=Dca56783.1 |
