Carnation DB

Dca5707.1

Annotation

9-exons
f-1
sp|B9GES5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_706239#unknown#0F0P0C
Os05t0460800-01 Protein-tyrosine phosphatase-like, PTPLA domain containing protein.
Repeat List (scaffold122)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5707.1	1	217	217	64.51	217	65	4e-82
Target_name	Start	End	Length	Cov(%)
sp\|B9GES5_POPTR	1	218	219	99.54

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5707.1	1	217	217	53.91	217	54	2e-64
Target_name	Start	End	Length	Cov(%)
Os05t0460800-01	1	218	220	99.09

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold122	Augus-PASA	mRNA	304115	306747	.	+	.	ID=Dca5707.1;Parent=Dca5707
scaffold122	Augus-PASA	exon	304115	304173	.	+	.	ID=Dca5707.1.exon1;Parent=Dca5707.1
scaffold122	Augus-PASA	exon	304268	304353	.	+	.	ID=Dca5707.1.exon2;Parent=Dca5707.1
scaffold122	Augus-PASA	exon	304447	304494	.	+	.	ID=Dca5707.1.exon3;Parent=Dca5707.1
scaffold122	Augus-PASA	exon	305180	305268	.	+	.	ID=Dca5707.1.exon4;Parent=Dca5707.1
scaffold122	Augus-PASA	exon	305396	305449	.	+	.	ID=Dca5707.1.exon5;Parent=Dca5707.1
scaffold122	Augus-PASA	exon	306003	306070	.	+	.	ID=Dca5707.1.exon6;Parent=Dca5707.1
scaffold122	Augus-PASA	exon	306196	306242	.	+	.	ID=Dca5707.1.exon7;Parent=Dca5707.1
scaffold122	Augus-PASA	exon	306364	306461	.	+	.	ID=Dca5707.1.exon8;Parent=Dca5707.1
scaffold122	Augus-PASA	exon	306643	306747	.	+	.	ID=Dca5707.1.exon9;Parent=Dca5707.1