Dca57122.1
Annotation
- 2-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold8170)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca57122.1 |
1 |
436 |
459 |
40.08 |
436 |
43 |
1e-92
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
207 |
609 |
1248 |
32.29 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca57122.1 |
223 |
414 |
459 |
16.99 |
192 |
40 |
8e-40
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
490 |
684 |
1428 |
13.65 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8170 |
Augustus |
mRNA |
7137 |
8749 |
. |
- |
. |
ID=Dca57122.1;Parent=Dca57122 |
| scaffold8170 |
Augustus |
exon |
7137 |
7933 |
. |
- |
. |
ID=Dca57122.1.exon1;Parent=Dca57122.1 |
| scaffold8170 |
Augustus |
exon |
8167 |
8749 |
. |
- |
. |
ID=Dca57122.1.exon2;Parent=Dca57122.1 |
