Carnation DB

Dca5722.1

Annotation

7-exons
f-1
sp|B9GGR4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_641513#unknown#0F0P0C
AT2G30105.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). | chr2:12849855-12851908 FORWARD LENGTH=367
Repeat List (scaffold122)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5722.1	18	393	395	50.37	376	53	3e-107
Target_name	Start	End	Length	Cov(%)
sp\|B9GGR4_POPTR	2	370	371	99.46

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5722.1	26	393	395	45.06	368	49	9e-99
Target_name	Start	End	Length	Cov(%)
AT2G30105.1	6	365	367	98.09

seqname	source	feature	start	end	score	strand	frame	group
scaffold122	Augus-PASA	mRNA	433682	436039	.	-	.	ID=Dca5722.1;Parent=Dca5722
scaffold122	Augus-PASA	exon	433682	433795	.	-	.	ID=Dca5722.1.exon1;Parent=Dca5722.1
scaffold122	Augus-PASA	exon	433889	434008	.	-	.	ID=Dca5722.1.exon2;Parent=Dca5722.1
scaffold122	Augus-PASA	exon	434126	434191	.	-	.	ID=Dca5722.1.exon3;Parent=Dca5722.1
scaffold122	Augus-PASA	exon	434810	434858	.	-	.	ID=Dca5722.1.exon4;Parent=Dca5722.1
scaffold122	Augus-PASA	exon	435011	435148	.	-	.	ID=Dca5722.1.exon5;Parent=Dca5722.1
scaffold122	Augus-PASA	exon	435240	435631	.	-	.	ID=Dca5722.1.exon6;Parent=Dca5722.1
scaffold122	Augus-PASA	exon	435731	436039	.	-	.	ID=Dca5722.1.exon7;Parent=Dca5722.1