Carnation DB

Dca5746.1

Annotation

7-exons
f-1
sp|D7U393_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_07s0005g04590#GO:0005488#1F0P0C
AT1G04130.1 | Symbols: TPR2, AtTPR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1073465-1075374 FORWARD LENGTH=360
Repeat List (scaffold1221)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5746.1	1	307	309	64.72	307	56	8e-105
Target_name	Start	End	Length	Cov(%)
sp\|D7U393_VITVI	1	362	364	99.45

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5746.1	1	306	309	62.13	306	54	2e-101
Target_name	Start	End	Length	Cov(%)
AT1G04130.1	1	357	360	99.16

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1221	Augustus	mRNA	1067	3874	.	-	.	ID=Dca5746.1;Parent=Dca5746
scaffold1221	Augustus	exon	1067	1140	.	-	.	ID=Dca5746.1.exon1;Parent=Dca5746.1
scaffold1221	Augustus	exon	1307	1399	.	-	.	ID=Dca5746.1.exon2;Parent=Dca5746.1
scaffold1221	Augustus	exon	1677	1794	.	-	.	ID=Dca5746.1.exon3;Parent=Dca5746.1
scaffold1221	Augustus	exon	2457	2591	.	-	.	ID=Dca5746.1.exon4;Parent=Dca5746.1
scaffold1221	Augus-PASA	exon	2680	2871	.	-	.	ID=Dca5746.1.exon5;Parent=Dca5746.1
scaffold1221	Augus-PASA	exon	2988	3200	.	-	.	ID=Dca5746.1.exon6;Parent=Dca5746.1
scaffold1221	Augus-PASA	exon	3770	3874	.	-	.	ID=Dca5746.1.exon7;Parent=Dca5746.1