Carnation DB

Dca5767.1

Annotation

6-exons
f-1
sp|B9GKK9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_640520#GO:0005673;GO:0006367#0F1P1C
Os10t0397200-01 Transcription initiation factor TFIIE, beta subunit domain containing protein.
Repeat List (scaffold1222)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5767.1	385	676	679	31.95	292	75	2e-116
Target_name	Start	End	Length	Cov(%)
sp\|B9GKK9_POPTR	1	284	284	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5767.1	385	676	679	27.09	292	64	3e-101
Target_name	Start	End	Length	Cov(%)
Os10t0397200-01	1	279	280	99.64

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1222	Augus-PASA	mRNA	44568	50690	.	-	.	ID=Dca5767.1;Parent=Dca5767
scaffold1222	Augus-PASA	exon	44568	44915	.	-	.	ID=Dca5767.1.exon1;Parent=Dca5767.1
scaffold1222	Augus-PASA	exon	46024	46140	.	-	.	ID=Dca5767.1.exon2;Parent=Dca5767.1
scaffold1222	Augus-PASA	exon	46231	46362	.	-	.	ID=Dca5767.1.exon3;Parent=Dca5767.1
scaffold1222	Augus-PASA	exon	46465	46755	.	-	.	ID=Dca5767.1.exon4;Parent=Dca5767.1
scaffold1222	Augustus	exon	47955	48097	.	-	.	ID=Dca5767.1.exon5;Parent=Dca5767.1
scaffold1222	Augustus	exon	49682	50690	.	-	.	ID=Dca5767.1.exon6;Parent=Dca5767.1