Carnation DB

Dca5800.1

Annotation

5-exons
f-1
sp|Q688L2_ORYSJ#Putative polyprotein#Oryza sativa subsp japonica (Rice)#Name=P0636E04.8#GO:0003676;GO:0015074#1F1P0C
Repeat List (scaffold12237)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5800.1	42	179	531	9.41	138	32	2e-06
Target_name	Start	End	Length	Cov(%)
sp\|Q688L2_ORYSJ	486	641	1679	9.29

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5800.1	131	347	531	17.13	217	42	6e-43
Target_name	Start	End	Length	Cov(%)
AT4G23160.1	149	369	1262	17.51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12237	Augustus	mRNA	1956	4854	.	+	.	ID=Dca5800.1;Parent=Dca5800
scaffold12237	Augustus	exon	1956	2375	.	+	.	ID=Dca5800.1.exon1;Parent=Dca5800.1
scaffold12237	Augustus	exon	2519	3171	.	+	.	ID=Dca5800.1.exon2;Parent=Dca5800.1
scaffold12237	Augustus	exon	3259	3305	.	+	.	ID=Dca5800.1.exon3;Parent=Dca5800.1
scaffold12237	Augustus	exon	4150	4380	.	+	.	ID=Dca5800.1.exon4;Parent=Dca5800.1
scaffold12237	Augustus	exon	4610	4854	.	+	.	ID=Dca5800.1.exon5;Parent=Dca5800.1