Dca58792.1
Annotation
- 2-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold8677)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58792.1 |
1 |
81 |
81 |
75.3 |
81 |
76 |
2e-31
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
836 |
916 |
1050 |
7.71 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58792.1 |
4 |
81 |
81 |
38.27 |
78 |
40 |
4e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1213 |
1291 |
1428 |
5.53 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8677 |
Augustus |
mRNA |
14489 |
15146 |
. |
- |
. |
ID=Dca58792.1;Parent=Dca58792 |
| scaffold8677 |
Augustus |
exon |
14489 |
14636 |
. |
- |
. |
ID=Dca58792.1.exon1;Parent=Dca58792.1 |
| scaffold8677 |
Augustus |
exon |
14902 |
15146 |
. |
- |
. |
ID=Dca58792.1.exon2;Parent=Dca58792.1 |
