Dca59139.1
Annotation
- 2-exons
- f-1
- sp|Q10HF0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g39400#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold8794)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59139.1 |
1 |
447 |
470 |
59.78 |
447 |
62 |
1e-163
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10HF0_ORYSJ |
536 |
991 |
1073 |
42.49 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59139.1 |
1 |
165 |
470 |
13.19 |
165 |
37 |
2e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
482 |
649 |
1401 |
11.99 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8794 |
Augustus |
mRNA |
5553 |
7029 |
. |
+ |
. |
ID=Dca59139.1;Parent=Dca59139 |
| scaffold8794 |
Augustus |
exon |
5553 |
6053 |
. |
+ |
. |
ID=Dca59139.1.exon1;Parent=Dca59139.1 |
| scaffold8794 |
Augustus |
exon |
6118 |
7029 |
. |
+ |
. |
ID=Dca59139.1.exon2;Parent=Dca59139.1 |
