Carnation DB

Dca59173.1

Annotation

26-exons
f-1
sp|B9IBN8_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_572009#unknown#0F0P0C
AT1G44910.1 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing protein 40A | chr1:16975930-16982818 FORWARD LENGTH=958
Repeat List (scaffold88)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca59173.1	2	974	975	57.33	973	55	0
Target_name	Start	End	Length	Cov(%)
sp\|B9IBN8_POPTR	11	1008	1019	97.93

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca59173.1	2	970	975	50.76	969	50	0
Target_name	Start	End	Length	Cov(%)
AT1G44910.1	12	958	958	98.85

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold88	Augustus	mRNA	194806	205581	.	+	.	ID=Dca59173.1;Parent=Dca59173
scaffold88	Augustus	exon	194806	195093	.	+	.	ID=Dca59173.1.exon1;Parent=Dca59173.1
scaffold88	Augustus	exon	195378	195521	.	+	.	ID=Dca59173.1.exon2;Parent=Dca59173.1
scaffold88	Augustus	exon	195933	196006	.	+	.	ID=Dca59173.1.exon3;Parent=Dca59173.1
scaffold88	Augustus	exon	196405	196474	.	+	.	ID=Dca59173.1.exon4;Parent=Dca59173.1
scaffold88	Augustus	exon	197991	198043	.	+	.	ID=Dca59173.1.exon5;Parent=Dca59173.1
scaffold88	Augustus	exon	198131	198188	.	+	.	ID=Dca59173.1.exon6;Parent=Dca59173.1
scaffold88	Augustus	exon	198279	198610	.	+	.	ID=Dca59173.1.exon7;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	198726	198798	.	+	.	ID=Dca59173.1.exon8;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	198956	199042	.	+	.	ID=Dca59173.1.exon9;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	199131	199199	.	+	.	ID=Dca59173.1.exon10;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	199471	199548	.	+	.	ID=Dca59173.1.exon11;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	199893	199979	.	+	.	ID=Dca59173.1.exon12;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	200077	200111	.	+	.	ID=Dca59173.1.exon13;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	200217	200322	.	+	.	ID=Dca59173.1.exon14;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	200765	200845	.	+	.	ID=Dca59173.1.exon15;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	200934	201026	.	+	.	ID=Dca59173.1.exon16;Parent=Dca59173.1
scaffold88	Augustus	exon	201101	201154	.	+	.	ID=Dca59173.1.exon17;Parent=Dca59173.1
scaffold88	Augustus	exon	201343	201459	.	+	.	ID=Dca59173.1.exon18;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	201544	201642	.	+	.	ID=Dca59173.1.exon19;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	202111	202158	.	+	.	ID=Dca59173.1.exon20;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	202453	202545	.	+	.	ID=Dca59173.1.exon21;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	203980	204087	.	+	.	ID=Dca59173.1.exon22;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	204329	204393	.	+	.	ID=Dca59173.1.exon23;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	204480	204582	.	+	.	ID=Dca59173.1.exon24;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	204979	205353	.	+	.	ID=Dca59173.1.exon25;Parent=Dca59173.1
scaffold88	Augus-PASA	exon	205444	205581	.	+	.	ID=Dca59173.1.exon26;Parent=Dca59173.1