Dca59300.1
Annotation
- 3-exons
- f-1
- sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
- Repeat List (scaffold8833)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59300.1 |
1 |
344 |
356 |
58.42 |
344 |
49 |
1e-98
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|H2KWP6_ORYSJ |
499 |
931 |
932 |
46.45 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59300.1 |
1 |
133 |
356 |
17.41 |
133 |
47 |
1e-27
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
909 |
1041 |
1401 |
9.49 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8833 |
Augustus |
mRNA |
7652 |
9160 |
. |
- |
. |
ID=Dca59300.1;Parent=Dca59300 |
| scaffold8833 |
Augustus |
exon |
7652 |
8121 |
. |
- |
. |
ID=Dca59300.1.exon1;Parent=Dca59300.1 |
| scaffold8833 |
Augustus |
exon |
8233 |
8476 |
. |
- |
. |
ID=Dca59300.1.exon2;Parent=Dca59300.1 |
| scaffold8833 |
Augustus |
exon |
8804 |
9160 |
. |
- |
. |
ID=Dca59300.1.exon3;Parent=Dca59300.1 |
