Dca60348.1
Annotation
- 3-exons
- f-1
- sp|Q2QQP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g30310#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold918)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca60348.1 |
309 |
399 |
463 |
11.66 |
91 |
60 |
3e-28
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QQP6_ORYSJ |
1188 |
1278 |
1361 |
6.68 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca60348.1 |
260 |
456 |
463 |
13.82 |
197 |
32 |
7e-28
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1193 |
1391 |
1401 |
14.2 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold918 |
Augustus |
mRNA |
10876 |
13809 |
. |
- |
. |
ID=Dca60348.1;Parent=Dca60348 |
| scaffold918 |
Augustus |
exon |
10876 |
11489 |
. |
- |
. |
ID=Dca60348.1.exon1;Parent=Dca60348.1 |
| scaffold918 |
Augustus |
exon |
12951 |
13177 |
. |
- |
. |
ID=Dca60348.1.exon2;Parent=Dca60348.1 |
| scaffold918 |
Augustus |
exon |
13259 |
13809 |
. |
- |
. |
ID=Dca60348.1.exon3;Parent=Dca60348.1 |
