Dca61551.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ5_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16050#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold96)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca61551.1 |
39 |
751 |
752 |
44.14 |
713 |
44 |
1e-166
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ5_ORYSJ |
62 |
793 |
1325 |
55.24 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca61551.1 |
331 |
742 |
752 |
23 |
412 |
39 |
1e-83
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
128 |
574 |
707 |
63.22 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold96 |
Augustus |
mRNA |
23223 |
25958 |
. |
+ |
. |
ID=Dca61551.1;Parent=Dca61551 |
| scaffold96 |
Augustus |
exon |
23223 |
24192 |
. |
+ |
. |
ID=Dca61551.1.exon1;Parent=Dca61551.1 |
| scaffold96 |
Augustus |
exon |
24577 |
25592 |
. |
+ |
. |
ID=Dca61551.1.exon2;Parent=Dca61551.1 |
| scaffold96 |
Augustus |
exon |
25686 |
25958 |
. |
+ |
. |
ID=Dca61551.1.exon3;Parent=Dca61551.1 |
