Dca61784.1
Annotation
- 4-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold968)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca61784.1 |
44 |
751 |
809 |
49.81 |
708 |
49 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
697 |
1525 |
1597 |
51.9 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca61784.1 |
44 |
750 |
809 |
28.18 |
707 |
30 |
1e-85
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
582 |
1357 |
1428 |
54.34 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold968 |
Augustus |
mRNA |
33814 |
38202 |
. |
- |
. |
ID=Dca61784.1;Parent=Dca61784 |
| scaffold968 |
Augustus |
exon |
33814 |
34439 |
. |
- |
. |
ID=Dca61784.1.exon1;Parent=Dca61784.1 |
| scaffold968 |
Augustus |
exon |
35246 |
35306 |
. |
- |
. |
ID=Dca61784.1.exon2;Parent=Dca61784.1 |
| scaffold968 |
Augustus |
exon |
36361 |
36894 |
. |
- |
. |
ID=Dca61784.1.exon3;Parent=Dca61784.1 |
| scaffold968 |
Augustus |
exon |
36994 |
38202 |
. |
- |
. |
ID=Dca61784.1.exon4;Parent=Dca61784.1 |
