Dca61909.1
Annotation
- 3-exons
- f-1
- sp|Q2QRM1_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g27096#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold9711)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca61909.1 |
1 |
126 |
252 |
31.74 |
126 |
53 |
2e-37
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRM1_ORYSJ |
1566 |
1717 |
1745 |
8.71 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca61909.1 |
4 |
81 |
252 |
11.9 |
78 |
38 |
9e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1213 |
1291 |
1428 |
5.53 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold9711 |
Augustus |
mRNA |
1765 |
3242 |
. |
+ |
. |
ID=Dca61909.1;Parent=Dca61909 |
| scaffold9711 |
Augustus |
exon |
1765 |
2009 |
. |
+ |
. |
ID=Dca61909.1.exon1;Parent=Dca61909.1 |
| scaffold9711 |
Augustus |
exon |
2195 |
2309 |
. |
+ |
. |
ID=Dca61909.1.exon2;Parent=Dca61909.1 |
| scaffold9711 |
Augustus |
exon |
2844 |
3242 |
. |
+ |
. |
ID=Dca61909.1.exon3;Parent=Dca61909.1 |
