Dca62343.1
Annotation
- 3-exons
- f-1
- sp|Q5MG99_IPOBA#Hypothetical retrotransposon#Ipomoea batatas (Sweet potato) (Convolvulus batatas)#unknown#GO:0003676;GO:0015074#1F1P0C
- Os11t0656500-01 Integrase, catalytic core domain containing protein.
- Repeat List (scaffold989)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62343.1 |
477 |
596 |
605 |
11.07 |
120 |
55 |
1e-27
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q5MG99_IPOBA |
1201 |
1302 |
1415 |
7.2 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62343.1 |
479 |
592 |
605 |
8.59 |
114 |
46 |
3e-21
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1271 |
1385 |
1401 |
8.2 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold989 |
Augustus |
mRNA |
69091 |
71275 |
. |
- |
. |
ID=Dca62343.1;Parent=Dca62343 |
| scaffold989 |
Augustus |
exon |
69091 |
69481 |
. |
- |
. |
ID=Dca62343.1.exon1;Parent=Dca62343.1 |
| scaffold989 |
Augustus |
exon |
69730 |
70347 |
. |
- |
. |
ID=Dca62343.1.exon2;Parent=Dca62343.1 |
| scaffold989 |
Augustus |
exon |
70467 |
71275 |
. |
- |
. |
ID=Dca62343.1.exon3;Parent=Dca62343.1 |
