Carnation DB

Dca6929.1

Annotation

6-exons
f-1
sp|Q2QRB0_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g28190#GO:0004523;GO:0003723;GO:0003964;GO:0015074;GO:0006278#3F2P0C
Repeat List (scaffold1276)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6929.1	1	78	79	53.16	78	49	1e-17
Target_name	Start	End	Length	Cov(%)
sp\|Q3I6J4_SILLA	1132	1217	1307	6.57

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6929.1	368	582	1182	6.34	215	35	2e-31
Target_name	Start	End	Length	Cov(%)
Os04t0191000-01	580	789	1539	13.64

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1276	Augustus	mRNA	23407	27519	.	-	.	ID=Dca6929.1;Parent=Dca6929
scaffold1276	Augustus	exon	23407	23982	.	-	.	ID=Dca6929.1.exon1;Parent=Dca6929.1
scaffold1276	Augustus	exon	24074	24328	.	-	.	ID=Dca6929.1.exon2;Parent=Dca6929.1
scaffold1276	Augustus	exon	24428	24793	.	-	.	ID=Dca6929.1.exon3;Parent=Dca6929.1
scaffold1276	Augustus	exon	24896	25461	.	-	.	ID=Dca6929.1.exon4;Parent=Dca6929.1
scaffold1276	Augustus	exon	25622	25664	.	-	.	ID=Dca6929.1.exon5;Parent=Dca6929.1
scaffold1276	Augustus	exon	25777	27519	.	-	.	ID=Dca6929.1.exon6;Parent=Dca6929.1