Carnation DB

Dca7083.1

Annotation

6-exons
f-1
sp|F6HIM0_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0059g02650#unknown#0F0P0C
AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234
Repeat List (scaffold1284)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca7083.1	37	224	224	42.85	188	51	2e-45
Target_name	Start	End	Length	Cov(%)
sp\|F6HIM0_VITVI	59	240	240	75.83

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca7083.1	36	224	224	40.62	189	48	1e-44
Target_name	Start	End	Length	Cov(%)
AT5G54680.1	50	234	234	79.05

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1284	Augustus	mRNA	12314	13630	.	+	.	ID=Dca7083.1;Parent=Dca7083
scaffold1284	Augustus	exon	12314	12352	.	+	.	ID=Dca7083.1.exon1;Parent=Dca7083.1
scaffold1284	Augustus	exon	12425	12471	.	+	.	ID=Dca7083.1.exon2;Parent=Dca7083.1
scaffold1284	Augus-PASA	exon	12628	12687	.	+	.	ID=Dca7083.1.exon3;Parent=Dca7083.1
scaffold1284	Augus-PASA	exon	12772	12852	.	+	.	ID=Dca7083.1.exon4;Parent=Dca7083.1
scaffold1284	Augus-PASA	exon	12982	13144	.	+	.	ID=Dca7083.1.exon5;Parent=Dca7083.1
scaffold1284	Augus-PASA	exon	13346	13630	.	+	.	ID=Dca7083.1.exon6;Parent=Dca7083.1