Carnation DB

Dca7104.1

Annotation

12-exons
f-1
sp|D7TMC1_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_13s0019g04000#GO:0009982;GO:0003723;GO:0001522#2F1P0C
sp|G7I9K6_MEDTR#RNA pseudourine synthase#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_136s0030, MTR_1g095580#GO:0009982;GO:0003723;GO:0001522#2F1P0C
Repeat List (scaffold1285)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca7104.1	2	331	366	66.93	330	72	7e-136
Target_name	Start	End	Length	Cov(%)
sp\|D7TMC1_VITVI	3	344	347	98.55

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca7104.1	2	348	366	61.47	347	55	3e-117
Target_name	Start	End	Length	Cov(%)
AT3G52260.3	6	415	416	98.55

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1285	Augus-PASA	mRNA	39924	45176	.	-	.	ID=Dca7104.1;Parent=Dca7104
scaffold1285	Augus-PASA	exon	39924	40031	.	-	.	ID=Dca7104.1.exon1;Parent=Dca7104.1
scaffold1285	Augus-PASA	exon	40715	40808	.	-	.	ID=Dca7104.1.exon2;Parent=Dca7104.1
scaffold1285	Augus-PASA	exon	41282	41360	.	-	.	ID=Dca7104.1.exon3;Parent=Dca7104.1
scaffold1285	Augus-PASA	exon	41927	41996	.	-	.	ID=Dca7104.1.exon4;Parent=Dca7104.1
scaffold1285	Augus-PASA	exon	42095	42162	.	-	.	ID=Dca7104.1.exon5;Parent=Dca7104.1
scaffold1285	Augus-PASA	exon	42380	42455	.	-	.	ID=Dca7104.1.exon6;Parent=Dca7104.1
scaffold1285	Augus-PASA	exon	42622	42697	.	-	.	ID=Dca7104.1.exon7;Parent=Dca7104.1
scaffold1285	Augustus	exon	42795	42897	.	-	.	ID=Dca7104.1.exon8;Parent=Dca7104.1
scaffold1285	Augustus	exon	43161	43326	.	-	.	ID=Dca7104.1.exon9;Parent=Dca7104.1
scaffold1285	Augustus	exon	43984	44074	.	-	.	ID=Dca7104.1.exon10;Parent=Dca7104.1
scaffold1285	Augustus	exon	44330	44376	.	-	.	ID=Dca7104.1.exon11;Parent=Dca7104.1
scaffold1285	Augustus	exon	45054	45176	.	-	.	ID=Dca7104.1.exon12;Parent=Dca7104.1