Carnation DB

Dca8540.1

Annotation

12-exons
f-1
sp|B9N7F5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_673211#GO:0003676;GO:0000166#2F0P0C
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=419
Repeat List (scaffold136)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8540.1	27	401	401	75.06	375	76	5e-174
Target_name	Start	End	Length	Cov(%)
sp\|B9N7F5_POPTR	31	426	426	92.95

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8540.1	25	401	401	74.81	377	76	2e-172
Target_name	Start	End	Length	Cov(%)
AT1G17370.1	24	419	419	94.51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold136	Augus-PASA	mRNA	213886	221531	.	+	.	ID=Dca8540.1;Parent=Dca8540
scaffold136	Augus-PASA	exon	213886	213990	.	+	.	ID=Dca8540.1.exon1;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	214640	214701	.	+	.	ID=Dca8540.1.exon2;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	214903	215005	.	+	.	ID=Dca8540.1.exon3;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	215300	215376	.	+	.	ID=Dca8540.1.exon4;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	215467	215528	.	+	.	ID=Dca8540.1.exon5;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	215623	215710	.	+	.	ID=Dca8540.1.exon6;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	215876	215951	.	+	.	ID=Dca8540.1.exon7;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	216060	216090	.	+	.	ID=Dca8540.1.exon8;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	218312	218431	.	+	.	ID=Dca8540.1.exon9;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	220091	220176	.	+	.	ID=Dca8540.1.exon10;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	220445	220624	.	+	.	ID=Dca8540.1.exon11;Parent=Dca8540.1
scaffold136	Augus-PASA	exon	221316	221531	.	+	.	ID=Dca8540.1.exon12;Parent=Dca8540.1