Carnation DB

Dca8543.1

Annotation

10-exons
f-1
sp|F6HXQ3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_09s0002g00740#unknown#0F0P0C
AT3G14172.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:4698860-4704773 REVERSE LENGTH=1270
Repeat List (scaffold136)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8543.1	21	1298	1298	49.22	1278	47	0
Target_name	Start	End	Length	Cov(%)
sp\|F6HXQ3_VITVI	20	1257	1257	98.48

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8543.1	630	1292	1298	22.95	663	44	7e-121
Target_name	Start	End	Length	Cov(%)
AT3G14172.1	624	1269	1270	50.86

seqname	source	feature	start	end	score	strand	frame	group
scaffold136	Augus-PASA	mRNA	239246	245193	.	-	.	ID=Dca8543.1;Parent=Dca8543
scaffold136	Augus-PASA	exon	239246	239310	.	-	.	ID=Dca8543.1.exon1;Parent=Dca8543.1
scaffold136	Augus-PASA	exon	239401	239484	.	-	.	ID=Dca8543.1.exon2;Parent=Dca8543.1
scaffold136	Augustus	exon	239577	240816	.	-	.	ID=Dca8543.1.exon3;Parent=Dca8543.1
scaffold136	Augustus	exon	240933	242868	.	-	.	ID=Dca8543.1.exon4;Parent=Dca8543.1
scaffold136	Augustus	exon	243046	243198	.	-	.	ID=Dca8543.1.exon5;Parent=Dca8543.1
scaffold136	Augustus	exon	243471	243513	.	-	.	ID=Dca8543.1.exon6;Parent=Dca8543.1
scaffold136	Augustus	exon	244161	244191	.	-	.	ID=Dca8543.1.exon7;Parent=Dca8543.1
scaffold136	Augustus	exon	244283	244382	.	-	.	ID=Dca8543.1.exon8;Parent=Dca8543.1
scaffold136	Augustus	exon	244499	244681	.	-	.	ID=Dca8543.1.exon9;Parent=Dca8543.1
scaffold136	Augustus	exon	245132	245193	.	-	.	ID=Dca8543.1.exon10;Parent=Dca8543.1