Carnation DB

Dca8707.1

Annotation

8-exons
f-1
sp|B9I2E2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_569733#GO:0005622;GO:0008270#1F0P1C
sp|G7KPS2_MEDTR#E3 SUMO-protein ligase RanBP2#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_6g069400#GO:0005622;GO:0016874;GO:0008270#2F0P1C
Repeat List (scaffold137)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8707.1	246	376	453	11.47	131	40	3e-17
Target_name	Start	End	Length	Cov(%)
sp\|B9I2E2_POPTR	423	534	537	20.85

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8707.1	60	448	453	35.98	389	38	2e-75
Target_name	Start	End	Length	Cov(%)
AT1G48570.1	59	453	455	86.81

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold137	Augus-PASA	mRNA	235190	238996	.	+	.	ID=Dca8707.1;Parent=Dca8707
scaffold137	Augus-PASA	exon	235190	235524	.	+	.	ID=Dca8707.1.exon1;Parent=Dca8707.1
scaffold137	Augus-PASA	exon	235816	235933	.	+	.	ID=Dca8707.1.exon2;Parent=Dca8707.1
scaffold137	Augus-PASA	exon	236024	236355	.	+	.	ID=Dca8707.1.exon3;Parent=Dca8707.1
scaffold137	Augustus	exon	236941	237057	.	+	.	ID=Dca8707.1.exon4;Parent=Dca8707.1
scaffold137	Augus-PASA	exon	237770	237886	.	+	.	ID=Dca8707.1.exon5;Parent=Dca8707.1
scaffold137	Augus-PASA	exon	238420	238536	.	+	.	ID=Dca8707.1.exon6;Parent=Dca8707.1
scaffold137	Augus-PASA	exon	238645	238743	.	+	.	ID=Dca8707.1.exon7;Parent=Dca8707.1
scaffold137	Augus-PASA	exon	238870	238996	.	+	.	ID=Dca8707.1.exon8;Parent=Dca8707.1