Dca9085.1
Annotation
- 3-exons
- f-1
- sp|C6SXW3_SOYBN#Putative uncharacterized protein#Glycine max (Soybean) (Glycine hispida)#unknown#GO:0005840;GO:0003735;GO:0006412#1F1P1C
- AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23090666-23091796 FORWARD LENGTH=137
- Repeat List (scaffold13880)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9085.1 |
16 |
97 |
105 |
52.38 |
82 |
68 |
5e-28
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|C6SXW3_SOYBN |
41 |
122 |
144 |
56.94 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9085.1 |
19 |
98 |
105 |
51.42 |
80 |
68 |
7e-29
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G57060.1 |
39 |
118 |
137 |
58.39 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold13880 |
Augustus |
mRNA |
7059 |
7659 |
. |
- |
. |
ID=Dca9085.1;Parent=Dca9085 |
| scaffold13880 |
Augustus |
exon |
7059 |
7203 |
. |
- |
. |
ID=Dca9085.1.exon1;Parent=Dca9085.1 |
| scaffold13880 |
Augus-PASA |
exon |
7282 |
7408 |
. |
- |
. |
ID=Dca9085.1.exon2;Parent=Dca9085.1 |
| scaffold13880 |
Augustus |
exon |
7614 |
7659 |
. |
- |
. |
ID=Dca9085.1.exon3;Parent=Dca9085.1 |
