Carnation DB

Dca11037.1

Annotation

12-exons
f-1
sp|B8LQY2_PICSI#Putative uncharacterized protein#Picea sitchensis (Sitka spruce) (Pinus sitchensis)#unknown#GO:0003676;GO:0000166#2F0P0C
Os07t0673500-01 Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''.
Repeat List (scaffold149)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11037.1	1	185	317	47.63	185	81	6e-87
Target_name	Start	End	Length	Cov(%)
sp\|B8LQY2_PICSI	1	188	331	56.79

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11037.1	1	185	317	45.11	185	78	9e-82
Target_name	Start	End	Length	Cov(%)
Os07t0673500-01	1	184	297	61.95

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold149	Augustus	mRNA	248775	253199	.	+	.	ID=Dca11037.1;Parent=Dca11037
scaffold149	Augustus	exon	248775	248861	.	+	.	ID=Dca11037.1.exon1;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	249628	249693	.	+	.	ID=Dca11037.1.exon2;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	250212	250286	.	+	.	ID=Dca11037.1.exon3;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	250381	250483	.	+	.	ID=Dca11037.1.exon4;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	250566	250612	.	+	.	ID=Dca11037.1.exon5;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	250767	250824	.	+	.	ID=Dca11037.1.exon6;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	250966	251015	.	+	.	ID=Dca11037.1.exon7;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	251107	251163	.	+	.	ID=Dca11037.1.exon8;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	251279	251388	.	+	.	ID=Dca11037.1.exon9;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	251507	251599	.	+	.	ID=Dca11037.1.exon10;Parent=Dca11037.1
scaffold149	Augus-PASA	exon	252638	252671	.	+	.	ID=Dca11037.1.exon11;Parent=Dca11037.1
scaffold149	Augustus	exon	253027	253199	.	+	.	ID=Dca11037.1.exon12;Parent=Dca11037.1