Carnation DB

Dca11388.1

Annotation

21-exons
f-1
sp|B9HGE4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1082821#GO:0016459;GO:0005524;GO:0003774#2F0P1C
AT1G50360.1 | Symbols: VIIIA, ATVIIIA | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:18650688-18657106 FORWARD LENGTH=1153
Repeat List (scaffold1508)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11388.1	20	336	336	67.55	317	66	2e-121
Target_name	Start	End	Length	Cov(%)
sp\|B9HGE4_POPTR	2	343	1174	29.13

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11388.1	28	336	336	63.09	309	66	9e-117
Target_name	Start	End	Length	Cov(%)
AT1G50360.1	8	323	1153	27.4

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1508	Augustus	mRNA	49109	61917	.	+	.	ID=Dca11388.1;Parent=Dca11388
scaffold1508	Augustus	exon	49109	49462	.	+	.	ID=Dca11388.1.exon1;Parent=Dca11388.1
scaffold1508	Augustus	exon	50235	50336	.	+	.	ID=Dca11388.1.exon2;Parent=Dca11388.1
scaffold1508	Augustus	exon	50411	50554	.	+	.	ID=Dca11388.1.exon3;Parent=Dca11388.1
scaffold1508	Augustus	exon	50672	50822	.	+	.	ID=Dca11388.1.exon4;Parent=Dca11388.1
scaffold1508	Augustus	exon	51007	51034	.	+	.	ID=Dca11388.1.exon5;Parent=Dca11388.1
scaffold1508	Augustus	exon	51717	51882	.	+	.	ID=Dca11388.1.exon6;Parent=Dca11388.1
scaffold1508	Augustus	exon	51993	52056	.	+	.	ID=Dca11388.1.exon7;Parent=Dca11388.1
scaffold1508	Augustus	exon	53592	53695	.	+	.	ID=Dca11388.1.exon8;Parent=Dca11388.1
scaffold1508	Augustus	exon	53796	53934	.	+	.	ID=Dca11388.1.exon9;Parent=Dca11388.1
scaffold1508	Augustus	exon	54508	54626	.	+	.	ID=Dca11388.1.exon10;Parent=Dca11388.1
scaffold1508	Augustus	exon	55792	55944	.	+	.	ID=Dca11388.1.exon11;Parent=Dca11388.1
scaffold1508	Augustus	exon	56052	56141	.	+	.	ID=Dca11388.1.exon12;Parent=Dca11388.1
scaffold1508	Augustus	exon	56291	56368	.	+	.	ID=Dca11388.1.exon13;Parent=Dca11388.1
scaffold1508	Augustus	exon	56484	56642	.	+	.	ID=Dca11388.1.exon14;Parent=Dca11388.1
scaffold1508	Augustus	exon	56924	57130	.	+	.	ID=Dca11388.1.exon15;Parent=Dca11388.1
scaffold1508	Augustus	exon	57476	57681	.	+	.	ID=Dca11388.1.exon16;Parent=Dca11388.1
scaffold1508	Augustus	exon	57815	57950	.	+	.	ID=Dca11388.1.exon17;Parent=Dca11388.1
scaffold1508	Augus-PASA	exon	59543	59672	.	+	.	ID=Dca11388.1.exon18;Parent=Dca11388.1
scaffold1508	Augus-PASA	exon	59886	60032	.	+	.	ID=Dca11388.1.exon19;Parent=Dca11388.1
scaffold1508	Augus-PASA	exon	60300	60358	.	+	.	ID=Dca11388.1.exon20;Parent=Dca11388.1
scaffold1508	Augus-PASA	exon	61252	61917	.	+	.	ID=Dca11388.1.exon21;Parent=Dca11388.1