Carnation DB

Dca11616.1

Annotation

9-exons
f-1
sp|A9P950_POPTR#Putative uncharacterized protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#unknown#GO:0005622;GO:0008270#1F0P1C
AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 | histone deacetylase 3 | chr3:16298045-16299585 FORWARD LENGTH=245
Repeat List (scaffold152)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11616.1	16	292	292	45.54	277	46	1e-37
Target_name	Start	End	Length	Cov(%)
sp\|A9P950_POPTR	1	279	279	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11616.1	21	289	292	40.41	269	44	8e-33
Target_name	Start	End	Length	Cov(%)
AT3G44750.1	3	241	245	97.55

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold152	Augustus	mRNA	196575	198985	.	+	.	ID=Dca11616.1;Parent=Dca11616
scaffold152	Augustus	exon	196575	196641	.	+	.	ID=Dca11616.1.exon1;Parent=Dca11616.1
scaffold152	Augustus	exon	196931	197001	.	+	.	ID=Dca11616.1.exon2;Parent=Dca11616.1
scaffold152	Augustus	exon	197106	197311	.	+	.	ID=Dca11616.1.exon3;Parent=Dca11616.1
scaffold152	Augustus	exon	197567	197628	.	+	.	ID=Dca11616.1.exon4;Parent=Dca11616.1
scaffold152	Augustus	exon	197710	197846	.	+	.	ID=Dca11616.1.exon5;Parent=Dca11616.1
scaffold152	Augustus	exon	197948	198007	.	+	.	ID=Dca11616.1.exon6;Parent=Dca11616.1
scaffold152	Augustus	exon	198089	198182	.	+	.	ID=Dca11616.1.exon7;Parent=Dca11616.1
scaffold152	Augustus	exon	198715	198835	.	+	.	ID=Dca11616.1.exon8;Parent=Dca11616.1
scaffold152	Augustus	exon	198925	198985	.	+	.	ID=Dca11616.1.exon9;Parent=Dca11616.1