Carnation DB

Dca12103.1

Annotation

5-exons
f-1
sp|B9MSY0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_826341#GO:0016592;GO:0001104#1F0P1C
AT2G28230.1 | Symbols: | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | chr2:12037855-12039009 REVERSE LENGTH=219
Repeat List (scaffold155)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12103.1	1	222	222	76.12	222	77	2e-103
Target_name	Start	End	Length	Cov(%)
sp\|B9MSY0_POPTR	1	221	221	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12103.1	1	218	222	66.66	218	68	1e-90
Target_name	Start	End	Length	Cov(%)
AT2G28230.1	1	218	219	99.54

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold155	Augus-PASA	mRNA	71031	73655	.	-	.	ID=Dca12103.1;Parent=Dca12103
scaffold155	Augus-PASA	exon	71031	71273	.	-	.	ID=Dca12103.1.exon1;Parent=Dca12103.1
scaffold155	Augus-PASA	exon	72415	72504	.	-	.	ID=Dca12103.1.exon2;Parent=Dca12103.1
scaffold155	Augus-PASA	exon	72988	73166	.	-	.	ID=Dca12103.1.exon3;Parent=Dca12103.1
scaffold155	Augus-PASA	exon	73397	73539	.	-	.	ID=Dca12103.1.exon4;Parent=Dca12103.1
scaffold155	Augustus	exon	73642	73655	.	-	.	ID=Dca12103.1.exon5;Parent=Dca12103.1