Carnation DB

Dca12341.1

Annotation

5-exons
f-1
sp|A5AUE6_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_021034#GO:0005524;GO:0003676;GO:0004674;GO:0005529;GO:0015074;GO:0048544#4F2P0C
sp|B5U9F7_SOYBN#Gag-protease-integrase-RT-RNaseH polyprotein#Glycine max (Soybean) (Glycine hispida)#unknown#GO:0003676;GO:0008233;GO:0008270;GO:0015074;GO:0006508#3F2P0C
Repeat List (scaffold1562)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12341.1	86	221	817	5.63	136	34	1e-15
Target_name	Start	End	Length	Cov(%)
sp\|A5AUE6_VITVI	1	132	2026	6.51

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12341.1	432	493	817	2.93	62	39	7e-07
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	877	935	1401	4.21

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1562	Augustus	mRNA	5471	9338	.	+	.	ID=Dca12341.1;Parent=Dca12341
scaffold1562	Augustus	exon	5471	6200	.	+	.	ID=Dca12341.1.exon1;Parent=Dca12341.1
scaffold1562	Augustus	exon	6696	7034	.	+	.	ID=Dca12341.1.exon2;Parent=Dca12341.1
scaffold1562	Augustus	exon	7297	7363	.	+	.	ID=Dca12341.1.exon3;Parent=Dca12341.1
scaffold1562	Augustus	exon	7577	7908	.	+	.	ID=Dca12341.1.exon4;Parent=Dca12341.1
scaffold1562	Augustus	exon	8353	9338	.	+	.	ID=Dca12341.1.exon5;Parent=Dca12341.1