Carnation DB

Dca12508.1

Annotation

5-exons
f-1
sp|D7TQP0_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_08s0040g01560#GO:0003677;GO:0003700;GO:0016987;GO:0006352#3F1P0C
AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase sigma-subunit F | chr2:15537502-15540016 REVERSE LENGTH=547
Repeat List (scaffold1573)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12508.1	2	355	355	62.53	354	63	8e-122
Target_name	Start	End	Length	Cov(%)
sp\|D7TQP0_VITVI	215	561	561	61.85

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12508.1	30	355	355	55.77	326	61	2e-114
Target_name	Start	End	Length	Cov(%)
AT2G36990.1	230	547	547	58.13

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1573	Augustus	mRNA	4992	8968	.	+	.	ID=Dca12508.1;Parent=Dca12508
scaffold1573	Augustus	exon	4992	5208	.	+	.	ID=Dca12508.1.exon1;Parent=Dca12508.1
scaffold1573	Augustus	exon	5300	5514	.	+	.	ID=Dca12508.1.exon2;Parent=Dca12508.1
scaffold1573	Augustus	exon	6116	6256	.	+	.	ID=Dca12508.1.exon3;Parent=Dca12508.1
scaffold1573	Augus-PASA	exon	6399	6599	.	+	.	ID=Dca12508.1.exon4;Parent=Dca12508.1
scaffold1573	Augus-PASA	exon	8675	8968	.	+	.	ID=Dca12508.1.exon5;Parent=Dca12508.1