Carnation DB

Dca13515.1

Annotation

12-exons
f-1
sp|D7TGS2_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0035g01090#GO:0000166#1F0P0C
AT1G33980.2 | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=484
Repeat List (scaffold163)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca13515.1	1	458	459	48.58	458	42	1e-100
Target_name	Start	End	Length	Cov(%)
sp\|D7TGS2_VITVI	1	518	519	99.8

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca13515.1	1	459	459	44.22	459	40	8e-84
Target_name	Start	End	Length	Cov(%)
AT1G33980.2	1	484	484	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold163	Augustus	mRNA	106056	113169	.	-	.	ID=Dca13515.1;Parent=Dca13515
scaffold163	Augustus	exon	106056	106094	.	-	.	ID=Dca13515.1.exon1;Parent=Dca13515.1
scaffold163	Augustus	exon	107236	107333	.	-	.	ID=Dca13515.1.exon2;Parent=Dca13515.1
scaffold163	Augustus	exon	107439	107537	.	-	.	ID=Dca13515.1.exon3;Parent=Dca13515.1
scaffold163	Augustus	exon	108046	108412	.	-	.	ID=Dca13515.1.exon4;Parent=Dca13515.1
scaffold163	Augustus	exon	109301	109371	.	-	.	ID=Dca13515.1.exon5;Parent=Dca13515.1
scaffold163	Augustus	exon	110772	110895	.	-	.	ID=Dca13515.1.exon6;Parent=Dca13515.1
scaffold163	Augustus	exon	111305	111376	.	-	.	ID=Dca13515.1.exon7;Parent=Dca13515.1
scaffold163	Augustus	exon	112246	112313	.	-	.	ID=Dca13515.1.exon8;Parent=Dca13515.1
scaffold163	Augustus	exon	112413	112511	.	-	.	ID=Dca13515.1.exon9;Parent=Dca13515.1
scaffold163	Augustus	exon	112608	112703	.	-	.	ID=Dca13515.1.exon10;Parent=Dca13515.1
scaffold163	Augustus	exon	112817	112923	.	-	.	ID=Dca13515.1.exon11;Parent=Dca13515.1
scaffold163	Augustus	exon	113030	113169	.	-	.	ID=Dca13515.1.exon12;Parent=Dca13515.1