Carnation DB

Dca15288.1

Annotation

9-exons
f-1
sp|B9S986_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1014500#unknown#0F0P0C
AT4G18570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10231439-10234534 FORWARD LENGTH=642
Repeat List (scaffold1737)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15288.1	1	550	634	54.41	550	59	5e-147
Target_name	Start	End	Length	Cov(%)
sp\|B9S986_RICCO	1	572	616	92.85

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15288.1	1	549	634	49.68	549	52	5e-119
Target_name	Start	End	Length	Cov(%)
AT4G18570.1	1	596	642	92.83

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1737	Augustus	mRNA	42400	48867	.	-	.	ID=Dca15288.1;Parent=Dca15288
scaffold1737	Augustus	exon	42400	42450	.	-	.	ID=Dca15288.1.exon1;Parent=Dca15288.1
scaffold1737	Augustus	exon	42594	42666	.	-	.	ID=Dca15288.1.exon2;Parent=Dca15288.1
scaffold1737	Augustus	exon	42798	42869	.	-	.	ID=Dca15288.1.exon3;Parent=Dca15288.1
scaffold1737	Augustus	exon	42991	43052	.	-	.	ID=Dca15288.1.exon4;Parent=Dca15288.1
scaffold1737	Augustus	exon	43807	43932	.	-	.	ID=Dca15288.1.exon5;Parent=Dca15288.1
scaffold1737	Augustus	exon	45397	45508	.	-	.	ID=Dca15288.1.exon6;Parent=Dca15288.1
scaffold1737	Augustus	exon	45611	45792	.	-	.	ID=Dca15288.1.exon7;Parent=Dca15288.1
scaffold1737	Augustus	exon	45883	46014	.	-	.	ID=Dca15288.1.exon8;Parent=Dca15288.1
scaffold1737	Augustus	exon	47773	48867	.	-	.	ID=Dca15288.1.exon9;Parent=Dca15288.1