Dca1540.1
Annotation
- 3-exons
- f-1
- sp|Q2AA50_ASPOF#Retrotransposon gag protein#Asparagus officinalis (Garden asparagus)#ORFNames=19.t00014#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold1047)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca1540.1 |
1 |
813 |
1097 |
40.65 |
813 |
55 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2AA50_ASPOF |
535 |
1319 |
1788 |
43.9 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca1540.1 |
287 |
756 |
1097 |
15.13 |
470 |
36 |
2e-70
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
553 |
995 |
1539 |
28.78 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1047 |
Augustus |
mRNA |
87376 |
90875 |
. |
+ |
. |
ID=Dca1540.1;Parent=Dca1540 |
| scaffold1047 |
Augustus |
exon |
87376 |
88165 |
. |
+ |
. |
ID=Dca1540.1.exon1;Parent=Dca1540.1 |
| scaffold1047 |
Augustus |
exon |
88299 |
89961 |
. |
+ |
. |
ID=Dca1540.1.exon2;Parent=Dca1540.1 |
| scaffold1047 |
Augustus |
exon |
90035 |
90875 |
. |
+ |
. |
ID=Dca1540.1.exon3;Parent=Dca1540.1 |
