Carnation DB

Dca15477.1

Annotation

15-exons
f-1
sp|B9HH41_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1082004#GO:0004816;GO:0005524;GO:0003676;GO:0006421#3F1P0C
AT4G17300.1 | Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:9681558-9684833 FORWARD LENGTH=567
Repeat List (scaffold175)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15477.1	1	552	552	80.43	552	77	0
Target_name	Start	End	Length	Cov(%)
sp\|B9HH41_POPTR	3	578	578	99.65

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15477.1	2	552	552	76.44	551	75	0
Target_name	Start	End	Length	Cov(%)
AT4G17300.1	3	567	567	99.64

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold175	Augus-PASA	mRNA	221015	227010	.	-	.	ID=Dca15477.1;Parent=Dca15477
scaffold175	Augus-PASA	exon	221015	221130	.	-	.	ID=Dca15477.1.exon1;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	221312	221438	.	-	.	ID=Dca15477.1.exon2;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	222065	222139	.	-	.	ID=Dca15477.1.exon3;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	222218	222313	.	-	.	ID=Dca15477.1.exon4;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	222416	222502	.	-	.	ID=Dca15477.1.exon5;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	222866	222949	.	-	.	ID=Dca15477.1.exon6;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	223053	223127	.	-	.	ID=Dca15477.1.exon7;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	223213	223281	.	-	.	ID=Dca15477.1.exon8;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	223363	223440	.	-	.	ID=Dca15477.1.exon9;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	223543	223623	.	-	.	ID=Dca15477.1.exon10;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	224492	224629	.	-	.	ID=Dca15477.1.exon11;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	224831	224935	.	-	.	ID=Dca15477.1.exon12;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	225697	225807	.	-	.	ID=Dca15477.1.exon13;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	226496	226564	.	-	.	ID=Dca15477.1.exon14;Parent=Dca15477.1
scaffold175	Augus-PASA	exon	226663	227010	.	-	.	ID=Dca15477.1.exon15;Parent=Dca15477.1