Carnation DB

Dca15829.1

Annotation

28-exons
f-1
sp|B9GIK9_POPTR#DNA-directed RNA polymerase#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1068975#GO:0005634;GO:0003677;GO:0003899;GO:0032549;GO:0008270#4F0P1C
Repeat List (scaffold1774)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15829.1	1	118	1339	4.92	118	56	4e-33
Target_name	Start	End	Length	Cov(%)
sp\|B9GIK9_POPTR	1	117	1394	8.39

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15829.1	1	118	1339	4.55	118	52	7e-31
Target_name	Start	End	Length	Cov(%)
Os04t0492300-01	1	117	1384	8.45

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1774	Augustus	mRNA	52404	68056	.	-	.	ID=Dca15829.1;Parent=Dca15829
scaffold1774	Augustus	exon	52404	52458	.	-	.	ID=Dca15829.1.exon1;Parent=Dca15829.1
scaffold1774	Augustus	exon	52576	52778	.	-	.	ID=Dca15829.1.exon2;Parent=Dca15829.1
scaffold1774	Augustus	exon	52876	53080	.	-	.	ID=Dca15829.1.exon3;Parent=Dca15829.1
scaffold1774	Augustus	exon	53220	53296	.	-	.	ID=Dca15829.1.exon4;Parent=Dca15829.1
scaffold1774	Augustus	exon	53402	53515	.	-	.	ID=Dca15829.1.exon5;Parent=Dca15829.1
scaffold1774	Augustus	exon	53605	53754	.	-	.	ID=Dca15829.1.exon6;Parent=Dca15829.1
scaffold1774	Augustus	exon	54345	54496	.	-	.	ID=Dca15829.1.exon7;Parent=Dca15829.1
scaffold1774	Augustus	exon	54576	54723	.	-	.	ID=Dca15829.1.exon8;Parent=Dca15829.1
scaffold1774	Augustus	exon	55049	55105	.	-	.	ID=Dca15829.1.exon9;Parent=Dca15829.1
scaffold1774	Augustus	exon	55230	55433	.	-	.	ID=Dca15829.1.exon10;Parent=Dca15829.1
scaffold1774	Augustus	exon	55860	55958	.	-	.	ID=Dca15829.1.exon11;Parent=Dca15829.1
scaffold1774	Augustus	exon	56450	56641	.	-	.	ID=Dca15829.1.exon12;Parent=Dca15829.1
scaffold1774	Augustus	exon	57145	57243	.	-	.	ID=Dca15829.1.exon13;Parent=Dca15829.1
scaffold1774	Augustus	exon	57735	57926	.	-	.	ID=Dca15829.1.exon14;Parent=Dca15829.1
scaffold1774	Augustus	exon	58276	58510	.	-	.	ID=Dca15829.1.exon15;Parent=Dca15829.1
scaffold1774	Augustus	exon	59014	59107	.	-	.	ID=Dca15829.1.exon16;Parent=Dca15829.1
scaffold1774	Augustus	exon	59449	59701	.	-	.	ID=Dca15829.1.exon17;Parent=Dca15829.1
scaffold1774	Augustus	exon	61590	61778	.	-	.	ID=Dca15829.1.exon18;Parent=Dca15829.1
scaffold1774	Augustus	exon	62195	62335	.	-	.	ID=Dca15829.1.exon19;Parent=Dca15829.1
scaffold1774	Augustus	exon	62423	62564	.	-	.	ID=Dca15829.1.exon20;Parent=Dca15829.1
scaffold1774	Augustus	exon	62658	62806	.	-	.	ID=Dca15829.1.exon21;Parent=Dca15829.1
scaffold1774	Augustus	exon	62904	63119	.	-	.	ID=Dca15829.1.exon22;Parent=Dca15829.1
scaffold1774	Augustus	exon	64878	64977	.	-	.	ID=Dca15829.1.exon23;Parent=Dca15829.1
scaffold1774	Augustus	exon	65067	65176	.	-	.	ID=Dca15829.1.exon24;Parent=Dca15829.1
scaffold1774	Augustus	exon	65535	65624	.	-	.	ID=Dca15829.1.exon25;Parent=Dca15829.1
scaffold1774	Augustus	exon	66661	66813	.	-	.	ID=Dca15829.1.exon26;Parent=Dca15829.1
scaffold1774	Augustus	exon	67726	67855	.	-	.	ID=Dca15829.1.exon27;Parent=Dca15829.1
scaffold1774	Augustus	exon	67986	68056	.	-	.	ID=Dca15829.1.exon28;Parent=Dca15829.1