Dca15897.1
Annotation
- 3-exons
- f-1
- sp|D7LDV4_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_483745#unknown#0F0P0C
- AT2G46000.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208
- Repeat List (scaffold178)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15897.1 |
16 |
190 |
193 |
48.18 |
175 |
51 |
8e-46
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D7LDV4_ARALL |
10 |
189 |
206 |
87.37 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15897.1 |
1 |
188 |
193 |
48.7 |
188 |
50 |
1e-42
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0148300-00 |
43 |
226 |
246 |
74.79 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold178 |
Augus-PASA |
mRNA |
48965 |
50547 |
. |
+ |
. |
ID=Dca15897.1;Parent=Dca15897 |
| scaffold178 |
Augus-PASA |
exon |
48965 |
49279 |
. |
+ |
. |
ID=Dca15897.1.exon1;Parent=Dca15897.1 |
| scaffold178 |
Augus-PASA |
exon |
49620 |
49748 |
. |
+ |
. |
ID=Dca15897.1.exon2;Parent=Dca15897.1 |
| scaffold178 |
Augus-PASA |
exon |
50410 |
50547 |
. |
+ |
. |
ID=Dca15897.1.exon3;Parent=Dca15897.1 |
