Carnation DB

Dca16110.1

Annotation

8-exons
f-1
sp|B9HZW1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_771833#unknown#0F0P0C
sp|B9SNN8_RICCO#Nucleic acid binding protein, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1010400#unknown#0F0P0C
Repeat List (scaffold1793)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca16110.1	177	344	344	37.79	168	78	1e-76
Target_name	Start	End	Length	Cov(%)
sp\|B9HZW1_POPTR	121	288	288	58.33

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca16110.1	178	344	344	35.46	167	74	4e-71
Target_name	Start	End	Length	Cov(%)
AT5G53800.1	185	351	351	47.57

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1793	Augus-PASA	mRNA	24681	31143	.	-	.	ID=Dca16110.1;Parent=Dca16110
scaffold1793	Augus-PASA	exon	24681	24728	.	-	.	ID=Dca16110.1.exon1;Parent=Dca16110.1
scaffold1793	Augus-PASA	exon	24824	24895	.	-	.	ID=Dca16110.1.exon2;Parent=Dca16110.1
scaffold1793	Augus-PASA	exon	25062	25140	.	-	.	ID=Dca16110.1.exon3;Parent=Dca16110.1
scaffold1793	Augus-PASA	exon	25361	25474	.	-	.	ID=Dca16110.1.exon4;Parent=Dca16110.1
scaffold1793	Augus-PASA	exon	27592	27633	.	-	.	ID=Dca16110.1.exon5;Parent=Dca16110.1
scaffold1793	Augus-PASA	exon	27709	27758	.	-	.	ID=Dca16110.1.exon6;Parent=Dca16110.1
scaffold1793	Augus-PASA	exon	28786	28831	.	-	.	ID=Dca16110.1.exon7;Parent=Dca16110.1
scaffold1793	Augus-PASA	exon	30560	31143	.	-	.	ID=Dca16110.1.exon8;Parent=Dca16110.1