Dca16336.1
Annotation
- 2-exons
- f-1
- sp|Q53K55_ORYSJ#Retrotransposon protein, putative, Ty1-copia sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g23750#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold18056)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16336.1 |
101 |
261 |
273 |
36.26 |
161 |
62 |
4e-53
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53K55_ORYSJ |
331 |
489 |
938 |
16.95 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16336.1 |
127 |
230 |
273 |
16.11 |
104 |
42 |
3e-20
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
529 |
633 |
1428 |
7.35 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold18056 |
Augustus |
mRNA |
7530 |
8841 |
. |
+ |
. |
ID=Dca16336.1;Parent=Dca16336 |
| scaffold18056 |
Augustus |
exon |
7530 |
7827 |
. |
+ |
. |
ID=Dca16336.1.exon1;Parent=Dca16336.1 |
| scaffold18056 |
Augustus |
exon |
8318 |
8841 |
. |
+ |
. |
ID=Dca16336.1.exon2;Parent=Dca16336.1 |
