Dca16789.1
Annotation
- 2-exons
- f-1
- sp|A5BPL3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_028741#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold184)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16789.1 |
9 |
354 |
393 |
35.62 |
346 |
39 |
7e-69
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5BPL3_VITVI |
11 |
355 |
1262 |
27.33 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16789.1 |
1 |
230 |
393 |
17.3 |
230 |
30 |
7e-25
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
1 |
232 |
237 |
97.89 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold184 |
Augustus |
mRNA |
33410 |
34866 |
. |
+ |
. |
ID=Dca16789.1;Parent=Dca16789 |
| scaffold184 |
Augustus |
exon |
33410 |
34556 |
. |
+ |
. |
ID=Dca16789.1.exon1;Parent=Dca16789.1 |
| scaffold184 |
Augustus |
exon |
34832 |
34866 |
. |
+ |
. |
ID=Dca16789.1.exon2;Parent=Dca16789.1 |
