Dca16923.1
Annotation
- 4-exons
- f-1
- sp|B9S7Y9_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1382930#unknown#0F0P0C
- AT4G33780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16202174-16203617 REVERSE LENGTH=203
- Repeat List (scaffold185)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16923.1 |
18 |
203 |
203 |
53.69 |
186 |
59 |
4e-48
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9S7Y9_RICCO |
25 |
200 |
200 |
88 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16923.1 |
41 |
203 |
203 |
49.26 |
163 |
61 |
3e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G33780.1 |
41 |
203 |
203 |
80.29 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold185 |
Augus-PASA |
mRNA |
104063 |
105738 |
. |
- |
. |
ID=Dca16923.1;Parent=Dca16923 |
| scaffold185 |
Augus-PASA |
exon |
104063 |
104218 |
. |
- |
. |
ID=Dca16923.1.exon1;Parent=Dca16923.1 |
| scaffold185 |
Augus-PASA |
exon |
104763 |
104828 |
. |
- |
. |
ID=Dca16923.1.exon2;Parent=Dca16923.1 |
| scaffold185 |
Augus-PASA |
exon |
105264 |
105485 |
. |
- |
. |
ID=Dca16923.1.exon3;Parent=Dca16923.1 |
| scaffold185 |
Augus-PASA |
exon |
105571 |
105738 |
. |
- |
. |
ID=Dca16923.1.exon4;Parent=Dca16923.1 |
