Carnation DB

Dca17096.1

Annotation

5-exons
f-1
sp|B9HP82_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_833248#GO:0003676;GO:0000166#2F0P0C
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2257732-2260101 REVERSE LENGTH=382
Repeat List (scaffold1861)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17096.1	1	275	359	46.51	275	57	1e-56
Target_name	Start	End	Length	Cov(%)
sp\|B9HP82_POPTR	1	271	316	85.75

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17096.1	1	193	359	35.65	193	63	2e-39
Target_name	Start	End	Length	Cov(%)
AT1G07350.1	31	234	382	53.4

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1861	Augus-PASA	mRNA	5168	6994	.	-	.	ID=Dca17096.1;Parent=Dca17096
scaffold1861	Augus-PASA	exon	5168	5826	.	-	.	ID=Dca17096.1.exon1;Parent=Dca17096.1
scaffold1861	Augus-PASA	exon	5915	5978	.	-	.	ID=Dca17096.1.exon2;Parent=Dca17096.1
scaffold1861	Augus-PASA	exon	6440	6589	.	-	.	ID=Dca17096.1.exon3;Parent=Dca17096.1
scaffold1861	Augus-PASA	exon	6684	6792	.	-	.	ID=Dca17096.1.exon4;Parent=Dca17096.1
scaffold1861	Augustus	exon	6897	6994	.	-	.	ID=Dca17096.1.exon5;Parent=Dca17096.1