Carnation DB

Dca17330.1

Annotation

6-exons
f-1
sp|A9PHB3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_727523#GO:0000166;GO:0016491#2F0P0C
AT4G05530.1 | Symbols: IBR1, SDRA | indole-3-butyric acid response 1 | chr4:2816462-2818074 FORWARD LENGTH=254
Repeat List (scaffold188)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17330.1	5	253	253	75.49	249	77	6e-112
Target_name	Start	End	Length	Cov(%)
sp\|A9PHB3_POPTR	8	256	256	97.26

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17330.1	3	253	253	74.3	251	75	5e-109
Target_name	Start	End	Length	Cov(%)
AT4G05530.1	4	254	254	98.81

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold188	Augus-PASA	mRNA	101067	103738	.	-	.	ID=Dca17330.1;Parent=Dca17330
scaffold188	Augus-PASA	exon	101067	101216	.	-	.	ID=Dca17330.1.exon1;Parent=Dca17330.1
scaffold188	Augus-PASA	exon	101306	101407	.	-	.	ID=Dca17330.1.exon2;Parent=Dca17330.1
scaffold188	Augus-PASA	exon	101516	101641	.	-	.	ID=Dca17330.1.exon3;Parent=Dca17330.1
scaffold188	Augus-PASA	exon	102557	102691	.	-	.	ID=Dca17330.1.exon4;Parent=Dca17330.1
scaffold188	Augus-PASA	exon	103381	103497	.	-	.	ID=Dca17330.1.exon5;Parent=Dca17330.1
scaffold188	Augus-PASA	exon	103607	103738	.	-	.	ID=Dca17330.1.exon6;Parent=Dca17330.1