Dca17959.1
Annotation
- 2-exons
- f-398
- sp|B9N0G4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_742547#unknown#0F0P0C
- AT1G57680.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 70 Blast hits to 70 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:21362749-21363837 REVERSE LENGTH=362
- Repeat List (scaffold192)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17959.1 |
1 |
362 |
386 |
50.25 |
362 |
54 |
2e-87
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9N0G4_POPTR |
1 |
354 |
402 |
88.05 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17959.1 |
1 |
361 |
386 |
45.59 |
361 |
48 |
2e-76
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G57680.1 |
1 |
359 |
362 |
99.17 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold192 |
PASA |
mRNA |
97659 |
100496 |
. |
- |
. |
ID=Dca17959.1;Parent=Dca17959 |
| scaffold192 |
PASA |
exon |
97659 |
99173 |
. |
- |
. |
ID=Dca17959.1.exon1;Parent=Dca17959.1 |
| scaffold192 |
PASA |
exon |
100386 |
100496 |
. |
- |
. |
ID=Dca17959.1.exon2;Parent=Dca17959.1 |
