Dca18242.1
Annotation
- 3-exons
- f-1
- sp|Q2R140_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g40450#GO:0004221;GO:0006511#1F1P0C
- Repeat List (scaffold194)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18242.1 |
135 |
448 |
494 |
35.22 |
314 |
52 |
3e-93
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R140_ORYSJ |
598 |
931 |
2446 |
13.65 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18242.1 |
150 |
447 |
494 |
22.87 |
298 |
32 |
2e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
895 |
1248 |
1401 |
25.26 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold194 |
Augustus |
mRNA |
51018 |
53966 |
. |
- |
. |
ID=Dca18242.1;Parent=Dca18242 |
| scaffold194 |
Augustus |
exon |
51018 |
51689 |
. |
- |
. |
ID=Dca18242.1.exon1;Parent=Dca18242.1 |
| scaffold194 |
Augustus |
exon |
51858 |
52389 |
. |
- |
. |
ID=Dca18242.1.exon2;Parent=Dca18242.1 |
| scaffold194 |
Augustus |
exon |
53686 |
53966 |
. |
- |
. |
ID=Dca18242.1.exon3;Parent=Dca18242.1 |
