Carnation DB

Dca18435.1

Annotation

6-exons
f-1
sp|B9T2X9_RICCO#Pentatricopeptide repeat-containing protein, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0158910#GO:0005488#1F0P0C
Repeat List (scaffold1952)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18435.1	32	522	566	63.78	491	74	0
Target_name	Start	End	Length	Cov(%)
sp\|B9T2X9_RICCO	32	518	553	88.06

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18435.1	41	537	566	59.36	497	68	0
Target_name	Start	End	Length	Cov(%)
AT3G59040.2	47	541	590	83.89

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1952	Augus-PASA	mRNA	30720	37352	.	-	.	ID=Dca18435.1;Parent=Dca18435
scaffold1952	Augus-PASA	exon	30720	31269	.	-	.	ID=Dca18435.1.exon1;Parent=Dca18435.1
scaffold1952	Augus-PASA	exon	31592	31690	.	-	.	ID=Dca18435.1.exon2;Parent=Dca18435.1
scaffold1952	Augus-PASA	exon	34639	34763	.	-	.	ID=Dca18435.1.exon3;Parent=Dca18435.1
scaffold1952	Augus-PASA	exon	35923	36171	.	-	.	ID=Dca18435.1.exon4;Parent=Dca18435.1
scaffold1952	Augus-PASA	exon	36581	37160	.	-	.	ID=Dca18435.1.exon5;Parent=Dca18435.1
scaffold1952	Augus-PASA	exon	37255	37352	.	-	.	ID=Dca18435.1.exon6;Parent=Dca18435.1