Carnation DB

Dca1855.1

Annotation

6-exons
f-1
sp|F6H6V7_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_05s0077g01760#GO:0004650;GO:0005975#1F1P0C
sp|B9RTB3_RICCO#Polygalacturonase, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0682780#GO:0005576;GO:0047911;GO:0004650;GO:0005975;GO:0007047#2F2P1C
Repeat List (scaffold106)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1855.1	23	437	459	62.96	415	70	1e-172
Target_name	Start	End	Length	Cov(%)
sp\|F6H6V7_VITVI	13	428	455	91.42

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1855.1	1	442	459	55.11	442	58	9e-150
Target_name	Start	End	Length	Cov(%)
AT3G16850.1	1	432	455	94.94

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold106	Augus-PASA	mRNA	164185	167304	.	-	.	ID=Dca1855.1;Parent=Dca1855
scaffold106	Augus-PASA	exon	164185	164843	.	-	.	ID=Dca1855.1.exon1;Parent=Dca1855.1
scaffold106	Augus-PASA	exon	164949	165019	.	-	.	ID=Dca1855.1.exon2;Parent=Dca1855.1
scaffold106	Augus-PASA	exon	165201	165375	.	-	.	ID=Dca1855.1.exon3;Parent=Dca1855.1
scaffold106	Augus-PASA	exon	165462	165582	.	-	.	ID=Dca1855.1.exon4;Parent=Dca1855.1
scaffold106	Augustus	exon	166306	166623	.	-	.	ID=Dca1855.1.exon5;Parent=Dca1855.1
scaffold106	Augustus	exon	167269	167304	.	-	.	ID=Dca1855.1.exon6;Parent=Dca1855.1